Transcriptome for Saccharomyces cerevisiae used in Mangkalaphiban et al., PLoS Genetics, 2021
DOI: https://doi.org/10.1371/journal.pgen.1009538
Preprint: https://doi.org/10.1101/2020.12.15.422930
Author contribution: Transcriptome produced by Richard Baker, PhD

UTR annotations were downloaded from YeastMine on July 3, 2017, which included annotations from Yassour (2009), Xu (2009), Miura (2006), Zhang (2005), and Nagalakshmi (2008). In cases where a given gene was associated with multiple UTRs in this database, the longest entry was chosen. The final UTRs and their associated sources are provided in 5prime_UTR_summary_updated.txt and 3prime_UTR_summary_updated.txt. For the purpose of ribosome profiling footprint P-site analysis by riboWaltz and downstream analysis, the stop codon is considered as a part of the 3’-UTR region rather than the CDS region, thus the length of CDS and 3’-UTR regions of each gene were adjusted accordingly by 3 bases.